Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs7968506 chr12:130760017 A/C 8.91E-5 134 20.6 42.27 46.53 KM Plot
TGCT rs79690018 chr2:29501344 C/T 0 134 42.27 25.02 0.57 KM Plot
TGCT rs7972561 chr12:107139983 T/A 0.000113 133 42.27 45.1 28.8 KM Plot
TGCT rs7975576 chr12:107132501 A/G 0.000116 132 44.52 45.1 28.8 KM Plot
TGCT rs79777194 chr6:15249801 A/G 3.68E-5 132 37.95 45.93 NA KM Plot
TGCT rs79915147 chr6:41344947 G/T 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs8006487 chr14:71011934 G/A 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs8010473 chr14:70988993 G/C 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs80125410 chr19:30340694 A/G 2.84E-6 130 37.3 54.18 20.6 KM Plot
TGCT rs80162872 chr10:27592770 C/G 0 127 42.18 45.83 18.85 KM Plot
TGCT rs80190634 chr16:67660902 G/A 0 133 46.07 24.1 0.57 KM Plot
TGCT rs80308641 chr7:127147638 C/A 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs8042246 chr15:34916127 C/T 3.26E-5 132 43.68 22.83 104.57 KM Plot
TGCT rs8042895 chr15:34916187 A/G 3.26E-5 132 43.68 22.83 104.57 KM Plot
TGCT rs8068811 chr17:39391230 A/T 7.83E-7 132 13.17 56.7 42.27 KM Plot